Publications

Publications in chronological order.

2017-2016

  • Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F; CycliX consortium. (2017) Transcriptional regulatory logic of the diurnal cycle in the mouse liver. PLoS Biol. 15: e2001069.

  • Tripathy A, Khanna S, Padhan P, Smita S, Raghav S, Gupta B. (2017) Direct recognition of LPS drive TLR4 expressing CD8+T cell activation in patients with rheumatoid arthritis. Sci Rep. , 7: 933.

  • Pradhan RN, Bues JJ, Gardeux V, Schwalie PC, Alpern D, Chen W, Russeil J, Raghav SK, Deplancke B. (2017) Dissecting the brown adipogenic regulatory network using integrative genomics. Sci Rep. 7: 42130.

  • Sengupta S, Naz S, Das I, Ahad A, Padhi A, Naik SK, Ganguli G, Pattanaik KP, Raghav SK, Nandicoori VK, Sonawane A. (2017) Mycobacterium tuberculosis EsxL inhibits MHC-II expression by promoting hypermethylation in class-II transactivator loci in macrophages. J Biol Chem. 292: 6855-6868.

  • 2015-2010

  • Simicevic J, Schmid AW, Gilardoni PA, Zoller B, Raghav SK, Krier I, Gubelmann C, Lisacek F, Naef F, Moniatte M, Deplancke B. (2013) Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nat Methods. 10:570-576.

  • Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, Hernandez N, Naef F; CycliX Consortium including Raghav SK. Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biol. 2012;10(11):e1001442

  • Raghav SK, Waszak MS, Krier I, Gubelmann C, Mikkelsen ST, Deplancke B. (2012) Integrative genomics identifies SMRT a gatekeeper of early adipogenesis through transcription factors C/EBPβ and KAISO. Molecular Cell 46, 335–350.

  • Bernasconi D, Canella D, Gilardi F, LeMartelot GL, Praz V, Migliavacca E, Delorenzi M, Hernandez N, and CycliX consortium (includes Raghav SK). (2012) A Multiplicity of Factors Contributes to Selective Transcription of a Subset of RNA polymerase III Genes in Mouse Liver. Genome Research 22: 666- 680.

  • Baitsch L, Baumgaertner P, Devêvre E, Raghav SK, Legat A, Barba L, Wieckowski S, Bouzourene H, Deplancke B, Romero P, Rufer N, Speiser DE. (2011) Exhaustion of human self/tumor-specific CD8 Tcells in melanoma metastases. Journal of Clinical Investigation 121: 2350-2360.

  • Elo LL, Järvenpää H, Tuomela S, Raghav SK, Ahlfors H, Laurila K, Gupta B, Lund RJ, Tahvanainen J, Hawkins RD, Orešič M, Lähdesmäki H, Rasool O, Rao KV, Aittokallio T, Lahesmaa R. (2010) IL-4 and STAT6-mediated transcriptional regulation to initiate Th2 program in human T cells. Immunity (2010) 6: 852-862 (Equal contribution first author).

  • 2009-2005

  • Laajala TD, Raghav S, Tuomela S, Lahesmaa R, Aittokallio T, Elo LL. (2009) A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments. BMC Genomics 18: 618.

  • Rautajoki KJ, Kyläniemi MK, Raghav SK, Rao K, Lahesmaa R. (2008) An insight into molecular mechanisms of human T helper cell differentiation. Annals of Medicine 40: 322-35.

  • Gupta B, Raghav SK, Das HR. (2008) S-Nitrosylation of mannose binding lectin regulates its functional activities and the formation of autoantibody in rheumatoid arthritis. Nitric oxide: Biology and Chemistry 18: 266-273.

  • Raghav SK, Gupta B, Das HR. (2007) Inhibition of lipopolysaccharide inducible iNOS and IL-1b expression by active compounds isolated from Ruta graveolens L. through suppression of NF-kB activation in murine macrophages. European Journal of Pharmacology 560: 69-80.

  • Raghav SK, Gupta B, Agrawal C, Chaturvedi VP, Das HR. (2006) Expression of TNF-a and related signaling molecules in the peripheral blood mononuclear cells of rheumatoid arthritis patients. Mediators of Inflammation 12682: 1-6.

  • Raghav SK, Gupta B, Agrawal C, Saroha A, Das RH, Chaturvedi VP, Das HR. (2006) Altered expression and glycosylation of plasma proteins in rheumatoid arthritis. Glycoconjugate Journal 23: 169-175.

  • Raghav SK, Gupta B, Agrawal C, Goswami K, Das HR. (2006) Anti-inflammatory effect of Ruta graveolens L. in murine macrophage cells. Journal of Ethnopharmacology 104: 234-239.

  • Gupta B, Raghav SK, Agrawal C, Das RH, Chaturvedi VP, Das HR. (2006) Anti-MBL autoantibodies in patients with rheumatoid arthritis: prevalence and clinical significance. Journal of Autoimmunity 27: 125-133.

  • Chaudhury I, Raghav SK, Gautam H, Das HR, Das RH. (2006) Suppression of inducible nitric oxide synthase by 10-23 DNAzymes in murine macrophages. FEBS Letters 580: 2046-2052.

  • Gupta B, Agrawal C, Raghav SK, Das SK, Das RH, Chaturvedi VP, Das HR. (2005) Association of mannose-binding lectin gene (MBL2) polymorphisms with rheumatoid arthritis in an Indian cohort of case-control samples. Journal of Human Genetics 50: 583–591.

  • Agrawal C, Raghav SK, Gupta B, Das RH, Chaturvedi VP, Goswami K, Das HR. (2005) Tumor necrosis factor-alpha microsatellite polymorphism association with rheumatoid. Archives of Medical Research 36: 555-559.