, 2023. NCoR1: a key player regulating mycobacterium tuberculosis pathogenesis. Autophagy.
, 2023. NCoR1 controls Mycobacterium tuberculosis growth in myeloid cells by regulating the AMPK-mTOR-TFEB axis. PLoS Biol 21(8):e3002231
, 2023. Lactobacillus rhamnosus reduces CD8(+)T cell mediated inflammation in patients with rheumatoid arthritis. Immunobiology 228(4):152415
, 2023. FtsE, the Nucleotide Binding Domain of the ABC Transporter Homolog FtsEX, Regulates Septal PG Synthesis in E. coli. Microbiol Spectr 11(3):e0286322
, 2023. NCoR1 controls immune tolerance in conventional dendritic cells by fine-tuning glycolysis and fatty acid oxidation. Redox Biol 59:102575
, 2022. A Multi-Omics Approach Reveals Features That Permit Robust and Widespread Regulation of IFN-Inducible Antiviral Effectors. J Immunol 209(10):1930-1941
, 2022. SMRT and NCoR1 fine-tune inflammatory versus tolerogenic balance in dendritic cells by differentially regulating STAT3 signaling. Front Immunol 13:910705
, 2022. CMTM6 attenuates cisplatin-induced cell death in OSCC by regulating AKT/c-Myc-driven ribosome biogenesis. FASEB J 36(10):e22566
, 2022. Dynamicity and persistence of severe acute respiratory syndrome coronavirus-2 antibody response after double dose and the third dose with BBV-152 and AZD1222 vaccines: A prospective, longitudinal cohort study. Front Microbiol 13:942659
, 2022. Epigenomics of conventional type-I dendritic cells depicted preferential control of TLR9 versus TLR3 response by NCoR1 through differential IRF3 activation. Cell Mol Life Sci 79(8):429
, 2022. Isolation and Characterization of Five Severe Acute Respiratory Syndrome Coronavirus 2 Strains of Different Clades and Lineages Circulating in Eastern India. Front Microbiol 13:856913
, 2022. Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection. Mol Omics 18(6):490-505
, 2022. Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India. Int J Infect Dis 119:111-113
, 2022. Toll-like receptor-7 activation in CD8+ T cells modulates inflammatory mediators in patients with rheumatoid arthritis. Rheumatol Int 42(7):1235-1245
, 2022. Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes. Nucleic Acids Res 50(3):1551-1561
, 2021. Persistence of Antibodies Against Spike Glycoprotein of SARS-CoV-2 in Healthcare Workers Post Double Dose of BBV-152 and AZD1222 Vaccines. Front Med (Lausanne) 8:778129
, 2021. Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity. FASEB J 35(7):e21713
, 2021. Aurora Kinase B Expression, Its Regulation and Therapeutic Targeting in Human Retinoblastoma. Invest Ophthalmol Vis Sci 62(3):16
, 2021. Increased Extracellular ATP in Plasma of Rheumatoid Arthritis Patients Activates CD8(+)T Cells. Arch Med Res 52(4):423-433
, 2021. Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion. Eur J Immunol 51(5):1126-1142
, 2021. Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2. Int J Infect Dis 104:491-500
, 2021. CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3β axis. JCI Insight 6.
, 2021. Differential mitochondrial genome in patients with Rheumatoid Arthritis. Autoimmunity 54(1):1-12
, 2020. Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity. Front Microbiol 11:594928
, 2020. NCoR1 fine-tunes type-I IFN response in cDC1 dendritic cells by directly regulating Myd88-IRF7 axis under TLR9. Eur J Immunol 50(12):1959-1975
, 2020. Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene. Int J Mol Sci 21.
, 2020. Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis. Mitochondrion 54:8-14
, 2020. BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets. Front Genet 11:3
, 2019. NCoR1: Putting the Brakes on the Dendritic Cell Immune Tolerance. iScience 19:996-1011
, 2019. ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer. Nat Commun 10(1):1809
, 2018. Importance of EMT Factor ZEB1 in cDC1 "MutuDC Line" Mediated Induction of Th1 Immune Response. Front Immunol 9:2604
, 2018. TRIM16 controls assembly and degradation of protein aggregates by modulating the p62-NRF2 axis and autophagy. EMBO J 37.
, 2017. Direct recognition of LPS drive TLR4 expressing CD8(+) T cell activation in patients with rheumatoid arthritis. Sci Rep 7(1):933
, 2017. Transcriptional regulatory logic of the diurnal cycle in the mouse liver. PLoS Biol 15(4):e2001069
, 2017. Dissecting the brown adipogenic regulatory network using integrative genomics. Sci Rep 7:42130
, 2015. A novel coumarin derivative, 8-methoxy chromen-2-one alleviates collagen induced arthritis by down regulating nitric oxide, NFκB and proinflammatory cytokines. Int Immunopharmacol 29(2):891-900
, 2015. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. Cell 162(5):1039-50
, 2015. TLR4 activation by lipopolysaccharide confers survival advantage to growth factor deprived prostate cancer cells. Prostate 75(10):1020-33
, 2014. Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network. Elife 3:e03346
, 2014. Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data. Bioinformatics 30(2):165-71
, 2013. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science 342(6159):744-7
, 2013. A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks. Mol Syst Biol 9:682
, 2013. Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization. Immunity 38(6):1271-84
, 2013. Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nat Methods 10(6):570-6
, 2012. Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO. Mol Cell 46(3):335-50
, 2012. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing. Methods Mol Biol 786:247-62
, 2011. Exhaustion of tumor-specific CD8⁺ T cells in metastases from melanoma patients. J Clin Invest 121(6):2350-60
, 2010. Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming. Immunity 32(6):852-62
, 2009. A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments. BMC Genomics 10:618
, 2008. An insight into molecular mechanisms of human T helper cell differentiation. Ann Med 40(5):322-35
, 2008. S-nitrosylation of mannose binding lectin regulates its functional activities and the formation of autoantibody in rheumatoid arthritis. Nitric Oxide 18(4):266-73
, 2007. Inhibition of lipopolysaccharide-inducible nitric oxide synthase and IL-1beta through suppression of NF-kappaB activation by 3-(1'-1'-dimethyl-allyl)-6-hydroxy-7-methoxy-coumarin isolated from Ruta graveolens L. Eur J Pharmacol 560(1):69-80
, 2006. Expression of TNF-alpha and related signaling molecules in the peripheral blood mononuclear cells of rheumatoid arthritis patients. Mediators Inflamm 2006(3):12682
, 2006. Anti-MBL autoantibodies in patients with rheumatoid arthritis: prevalence and clinical significance. J Autoimmun 27(2):125-33
, 2006. Altered expression and glycosylation of plasma proteins in rheumatoid arthritis. Glycoconj J 23(3-4):167-73
, 2006. Suppression of inducible nitric oxide synthase by 10-23 DNAzymes in murine macrophage. FEBS Lett 580(8):2046-52
, 2005. Association of mannose-binding lectin gene (MBL2) polymorphisms with rheumatoid arthritis in an Indian cohort of case-control samples. J Hum Genet 50(11):583-591
, 2005. Tumor necrosis factor-alpha microsatellite polymorphism association with rheumatoid arthritis in Indian patients. Arch Med Res 36(5):555-9
Publication list retrieved from NCBI using ImpactPubs
.Book Chapters
Bhawna Gupta*, Kumar Sagar Jaiswal, Arup Ghosh and Sunil Kumar Raghav*. Chapter 22: Epigenetics and Epigenomics Analysis for Autoimmune Diseases, Computational Epigenetics and Diseases, Elsevier Science Direct, 2018 (ISBN: 9780128145135)
Sunil Kumar Raghav and Bart Deplancke. Genome-Wide Profiling of DNA-Binding Proteins Using Barcode-Based Multiplex Solexa Sequencing, Gene Regulatory Networks, Springer, 2012 (ISBN: 978-1-61779-292-2)
Patents
1. Method for the diagnosis of rheumatoid arthritis. Hasi Das, Bhawna Gupta, Sunil Kumar Raghav, Kalyan Goswami, Charu Agrawal and Rakha Hari Das. IPC8 Class: AG01N3353FI, US Patent 7,763,436.
2. Novel anti-inflammatory compound 3-(1, 1-dimethyl-allyl)-6-hydroxy-chromen-2-one isolated from Ruta graveolens L. Hasi Das, Sunil Kumar Raghav, Bhawna Gupta. IPC8 Class: AA61K31352FI, US Patent App. 11/935,985.
3. Novel diagnostic marker, a diagnostic kit and a method for diagnosis of rheumatoid arthritis. Hasi Das, Bhawna Gupta, Sunil Kumar Raghav, Kalyan Goswami, Charu Agrawal and Rakha Hari Das. US Patent App. 11/281,243.