Publications

Borah NA; Sradhanjali S; Barik MR; Jha A; Tripathy D; Kaliki S; Rath S; Raghav SK; Patnaik S; Mittal R; Reddy MM, 2021. Aurora Kinase B Expression, Its Regulation and Therapeutic Targeting in Human Retinoblastoma.  Invest Ophthalmol Vis Sci 62(3):16

Tripathy A; Padhan P; Swain N; Raghav SK; Gupta B, 2021. Increased Extracellular ATP in Plasma of Rheumatoid Arthritis Patients Activates CD8+T Cells.  Arch Med Res.

Smita S; Ghosh A; Biswas VK; Ahad A; Podder S; Jha A; Sen K; Acha-Orbea H; Raghav SK, 2021. Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion.  Eur J Immunol 51(5):1126-1142

Dash P; Turuk J; Behera SK; Palo SK; Raghav SK; Ghosh A; Sabat J; Rath S; Subhadra S; Rana K; Bhattacharya D; Kanungo S; Kshatri JS; Mishra BK; Dash S; Parida A; Pati S, 2021. Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2.  Int J Infect Dis 104:491-500

Mohapatra P; Shriwas O; Mohanty S; Ghosh A; Smita S; Kaushik SR; Arya R; Rath R; Das Majumdar SK; Muduly DK; Raghav SK; Nanda RK; Dash R, 2021. CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3β axis.  JCI Insight 6.

Jaiswal KS; Khanna S; Ghosh A; Padhan P; Raghav SK; Gupta B, 2021. Differential mitochondrial genome in patients with Rheumatoid Arthritis.  Autoimmunity 54(1):1-12

Mishra GP; Ghosh A; Jha A; Raghav SK, 2020. BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets.  Front Genet 11:3

Khanna S; Padhan P; Jaiswal KS; Jain AP; Ghosh A; Tripathy A; Gowda H; Raghav SK; Gupta B, 2020. Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis.  Mitochondrion 54:8-14

Das D; Das A; Sahu M; Mishra SS; Khan S; Bejugam PR; Rout PK; Das A; Bano S; Mishra GP; Raghav SK; Dixit A; Panda AC, 2020. Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene.  Int J Mol Sci 21.

Ahad A; Smita S; Mishra GP; Biswas VK; Sen K; Gupta B; Garcin D; Acha-Orbea H; Raghav SK, 2020. NCoR1 fine-tunes type-I IFN response in cDC1 dendritic cells by directly regulating Myd88-IRF7 axis under TLR9.  Eur J Immunol 50(12):1959-1975

Raghav S; Ghosh A; Turuk J; Kumar S; Jha A; Madhulika S; Priyadarshini M; Biswas VK; Shyamli PS; Singh B; Singh N; Singh D; Datey A; Avula K; Smita S; Sabat J; Bhattacharya D; Kshatri JS; Vasudevan D; Suryawanshi A; Dash R; Senapati S; Beuria TK; Swain R; Chattopadhyay S; Syed GH; Dixit A; Prasad P; Pati S; Parida A, 2020. Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity.  Front Microbiol 11:594928

Ahad A; Stevanin M; Smita S; Mishra GP; Gupta D; Waszak S; Sarkar UA; Basak S; Gupta B; Acha-Orbea H; Raghav SK, 2019. NCoR1: Putting the Brakes on the Dendritic Cell Immune Tolerance.  iScience 19:996-1011

Chen W; Schwalie PC; Pankevich EV; Gubelmann C; Raghav SK; Dainese R; Cassano M; Imbeault M; Jang SM; Russeil J; Delessa T; Duc J; Trono D; Wolfrum C; Deplancke B, 2019. ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer.  Nat Commun 10(1):1809

Smita S; Ahad A; Ghosh A; Biswas VK; Koga MM; Gupta B; Acha-Orbea H; Raghav SK, 2018. Importance of EMT Factor ZEB1 in cDC1 "MutuDC Line" Mediated Induction of Th1 Immune Response.  Front Immunol 9:2604

Jena KK; Kolapalli SP; Mehto S; Nath P; Das B; Sahoo PK; Ahad A; Syed GH; Raghav SK; Senapati S; Chauhan S; Chauhan S, 2018. TRIM16 controls assembly and degradation of protein aggregates by modulating the p62-NRF2 axis and autophagy.  EMBO J 37.

Tripathy A; Khanna S; Padhan P; Smita S; Raghav S; Gupta B, 2017. Direct recognition of LPS drive TLR4 expressing CD8+ T cell activation in patients with rheumatoid arthritis.  Sci Rep 7(1):933

Sobel JA; Krier I; Andersin T; Raghav S; Canella D; Gilardi F; Kalantzi AS; Rey G; Weger B; Gachon F; Dal Peraro M; Hernandez N; Schibler U; Deplancke B; Naef F, 2017. Transcriptional regulatory logic of the diurnal cycle in the mouse liver.  PLoS Biol 15(4):e2001069

Pradhan RN; Bues JJ; Gardeux V; Schwalie PC; Alpern D; Chen W; Russeil J; Raghav SK; Deplancke B, 2017. Dissecting the brown adipogenic regulatory network using integrative genomics.  Sci Rep 7:42130

Jain S; Suklabaidya S; Das B; Raghav SK; Batra SK; Senapati S, 2015. TLR4 activation by lipopolysaccharide confers survival advantage to growth factor deprived prostate cancer cells.  Prostate 75(10):1020-33

Waszak SM; Delaneau O; Gschwind AR; Kilpinen H; Raghav SK; Witwicki RM; Orioli A; Wiederkehr M; Panousis NI; Yurovsky A; Romano-Palumbo L; Planchon A; Bielser D; Padioleau I; Udin G; Thurnheer S; Hacker D; Hernandez N; Reymond A; Deplancke B; Dermitzakis ET, 2015. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.  Cell 162(5):1039-50

Sahu D; Raghav SK; Gautam H; Das HR, 2015. A novel coumarin derivative, 8-methoxy chromen-2-one alleviates collagen induced arthritis by down regulating nitric oxide, NFκB and proinflammatory cytokines.  Int Immunopharmacol 29(2):891-900

Gubelmann C; Schwalie PC; Raghav SK; Röder E; Delessa T; Kiehlmann E; Waszak SM; Corsinotti A; Udin G; Holcombe W; Rudofsky G; Trono D; Wolfrum C; Deplancke B, 2014. Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network.  Elife 3:e03346

Waszak SM; Kilpinen H; Gschwind AR; Orioli A; Raghav SK; Witwicki RM; Migliavacca E; Yurovsky A; Lappalainen T; Hernandez N; Reymond A; Dermitzakis ET; Deplancke B, 2014. Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.  Bioinformatics 30(2):165-71

Kilpinen H; Waszak SM; Gschwind AR; Raghav SK; Witwicki RM; Orioli A; Migliavacca E; Wiederkehr M; Gutierrez-Arcelus M; Panousis NI; Yurovsky A; Lappalainen T; Romano-Palumbo L; Planchon A; Bielser D; Bryois J; Padioleau I; Udin G; Thurnheer S; Hacker D; Core LJ; Lis JT; Hernandez N; Reymond A; Deplancke B; Dermitzakis ET, 2013. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.  Science 342(6159):744-7

Gubelmann C; Waszak SM; Isakova A; Holcombe W; Hens K; Iagovitina A; Feuz JD; Raghav SK; Simicevic J; Deplancke B, 2013. A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks.  Mol Syst Biol 9:682

Hawkins RD; Larjo A; Tripathi SK; Wagner U; Luu Y; Lönnberg T; Raghav SK; Lee LK; Lund R; Ren B; Lähdesmäki H; Lahesmaa R, 2013. Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization.  Immunity 38(6):1271-84

Simicevic J; Schmid AW; Gilardoni PA; Zoller B; Raghav SK; Krier I; Gubelmann C; Lisacek F; Naef F; Moniatte M; Deplancke B, 2013. Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics.  Nat Methods 10(6):570-6

Raghav SK; Waszak SM; Krier I; Gubelmann C; Isakova A; Mikkelsen TS; Deplancke B, 2012. Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO.  Mol Cell 46(3):335-50

Raghav SK; Deplancke B, 2012. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing.  Methods Mol Biol 786:247-62

Baitsch L; Baumgaertner P; Devêvre E; Raghav SK; Legat A; Barba L; Wieckowski S; Bouzourene H; Deplancke B; Romero P; Rufer N; Speiser DE, 2011. Exhaustion of tumor-specific CD8⁺ T cells in metastases from melanoma patients.  J Clin Invest 121(6):2350-60

Elo LL; Järvenpää H; Tuomela S; Raghav S; Ahlfors H; Laurila K; Gupta B; Lund RJ; Tahvanainen J; Hawkins RD; Oresic M; Lähdesmäki H; Rasool O; Rao KV; Aittokallio T; Lahesmaa R, 2010. Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.  Immunity 32(6):852-62

Laajala TD; Raghav S; Tuomela S; Lahesmaa R; Aittokallio T; Elo LL, 2009. A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments.  BMC Genomics 10:618

Rautajoki KJ; Kylaniemi MK; Raghav SK; Rao K; Lahesmaa R, 2008. An insight into molecular mechanisms of human T helper cell differentiation.  Ann Med 40(5):322-35

Gupta B; Raghav SK; Das HR, 2008. S-nitrosylation of mannose binding lectin regulates its functional activities and the formation of autoantibody in rheumatoid arthritis.  Nitric Oxide 18(4):266-73

Raghav SK; Gupta B; Shrivastava A; Das HR, 2007. Inhibition of lipopolysaccharide-inducible nitric oxide synthase and IL-1beta through suppression of NF-kappaB activation by 3-(1'-1'-dimethyl-allyl)-6-hydroxy-7-methoxy-coumarin isolated from Ruta graveolens L.  Eur J Pharmacol 560(1):69-80

Raghav SK; Gupta B; Agrawal C; Chaturvedi VP; Das HR, 2006. Expression of TNF-alpha and related signaling molecules in the peripheral blood mononuclear cells of rheumatoid arthritis patients.  Mediators Inflamm 2006(3):12682

Gupta B; Raghav SK; Agrawal C; Chaturvedi VP; Das RH; Das HR, 2006. Anti-MBL autoantibodies in patients with rheumatoid arthritis: prevalence and clinical significance.  J Autoimmun 27(2):125-33

Raghav SK; Gupta B; Agrawal C; Saroha A; Das RH; Chaturvedi VP; Das HR, 2006. Altered expression and glycosylation of plasma proteins in rheumatoid arthritis.  Glycoconj J 23(3-4):167-73

Chaudhury I; Raghav SK; Gautam HK; Das HR; Das RH, 2006. Suppression of inducible nitric oxide synthase by 10-23 DNAzymes in murine macrophage.  FEBS Lett 580(8):2046-52

Gupta B; Agrawal C; Raghav SK; Das SK; Das RH; Chaturvedi VP; Das HR, 2005. Association of mannose-binding lectin gene (MBL2) polymorphisms with rheumatoid arthritis in an Indian cohort of case-control samples.  J Hum Genet 50(11):583-591

Agrawal C; Raghav SK; Gupta B; Das RH; Chaturvedi VP; Goswami K; Das HR, 2005. Tumor necrosis factor-alpha microsatellite polymorphism association with rheumatoid arthritis in Indian patients.  Arch Med Res 36(5):555-9

Publication list retrieved from NCBI using ImpactPubs

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Book Chapters

Bhawna Gupta*, Kumar Sagar Jaiswal, Arup Ghosh and Sunil Kumar Raghav*. Chapter 22: Epigenetics and Epigenomics Analysis for Autoimmune Diseases, Computational Epigenetics and Diseases, Elsevier Science Direct, 2018 (ISBN: 9780128145135)

Patents

1.Method for the diagnosis of rheumatoid arthritis. Hasi Das, Bhawna Gupta, Sunil Kumar Raghav, Kalyan Goswami, Charu Agrawal and Rakha Hari Das. IPC8 Class: AG01N3353FI, US Patent 7,763,436.

2. Novel anti-inflammatory compound 3-(1, 1-dimethyl-allyl)-6-hydroxy-chromen-2-one isolated from Ruta graveolens L. Hasi Das, Sunil Kumar Raghav, Bhawna Gupta. IPC8 Class: AA61K31352FI, US Patent App. 11/935,985.

3. Novel diagnostic marker, a diagnostic kit and a method for diagnosis of rheumatoid arthritis. Hasi Das, Bhawna Gupta, Sunil Kumar Raghav, Kalyan Goswami, Charu Agrawal and Rakha Hari Das. US Patent App. 11/281,243.