Our lab has recently developed BedSect, a webserver application for co-binding event determination. A preprint version is available at Biorxiv.
Mishra GP, Ghosh A, Jha A, Raghav SK. Bedsect: An integrated web server application to perform intersection, visualization and functional annotation of genomic regions from multiple datasets.bioRxiv 481333. 2018 Nov 29. DOIAccess Bedsect